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C

CELLML - Static variable in class de.unirostock.sems.bives.tools.DocumentClassifier
 
classify(InputStream, URI) - Method in class de.unirostock.sems.bives.tools.DocumentClassifier
 
classify(TreeDocument) - Method in class de.unirostock.sems.bives.tools.DocumentClassifier
 
classify(String) - Method in class de.unirostock.sems.bives.tools.DocumentClassifier
 
classify(File) - Method in class de.unirostock.sems.bives.tools.DocumentClassifier
 

D

de.unirostock.sems.bives - package de.unirostock.sems.bives
 
de.unirostock.sems.bives.tools - package de.unirostock.sems.bives.tools
 
description - Variable in class de.unirostock.sems.bives.Executer.Option
 
DocumentClassifier - Class in de.unirostock.sems.bives.tools
 
DocumentClassifier() - Constructor for class de.unirostock.sems.bives.tools.DocumentClassifier
 

E

executeCompare(String, String, HashMap<String, String>, int, List<Exception>) - Method in class de.unirostock.sems.bives.Executer
 
Executer - Class in de.unirostock.sems.bives
 
Executer() - Constructor for class de.unirostock.sems.bives.Executer
 
Executer.Option - Class in de.unirostock.sems.bives
 
Executer.Option(int, String) - Constructor for class de.unirostock.sems.bives.Executer.Option
 
executeSingle(String, HashMap<String, String>, int, List<Exception>) - Method in class de.unirostock.sems.bives.Executer
 
exit - Static variable in class de.unirostock.sems.bives.Main
 

G

get(String) - Method in class de.unirostock.sems.bives.Executer
 
getAddOptions() - Method in class de.unirostock.sems.bives.Executer
 
getCellMlDocument() - Method in class de.unirostock.sems.bives.tools.DocumentClassifier
 
getExceptions() - Method in class de.unirostock.sems.bives.tools.DocumentClassifier
 
getOptions() - Method in class de.unirostock.sems.bives.Executer
 
getSbmlDocument() - Method in class de.unirostock.sems.bives.tools.DocumentClassifier
 
getXmlDocument() - Method in class de.unirostock.sems.bives.tools.DocumentClassifier
 

H

humanReadable(int) - Static method in class de.unirostock.sems.bives.tools.DocumentClassifier
 

M

Main - Class in de.unirostock.sems.bives
 
Main() - Constructor for class de.unirostock.sems.bives.Main
 
main(String[]) - Static method in class de.unirostock.sems.bives.Main
 
Main.ExecutionException - Exception in de.unirostock.sems.bives
 
Main.ExecutionException(String) - Constructor for exception de.unirostock.sems.bives.Main.ExecutionException
 

R

REQ_FILES - Static variable in class de.unirostock.sems.bives.Executer
 
REQ_WANT - Static variable in class de.unirostock.sems.bives.Executer
 
REQ_WANT_CELLML - Static variable in class de.unirostock.sems.bives.Executer
 
REQ_WANT_COMP_HIERARCHY_DOT - Static variable in class de.unirostock.sems.bives.Executer
 
REQ_WANT_COMP_HIERARCHY_GRAPHML - Static variable in class de.unirostock.sems.bives.Executer
 
REQ_WANT_COMP_HIERARCHY_JSON - Static variable in class de.unirostock.sems.bives.Executer
 
REQ_WANT_DIFF - Static variable in class de.unirostock.sems.bives.Executer
 
REQ_WANT_DOCUMENTTYPE - Static variable in class de.unirostock.sems.bives.Executer
 
REQ_WANT_META - Static variable in class de.unirostock.sems.bives.Executer
 
REQ_WANT_REACTIONS_DOT - Static variable in class de.unirostock.sems.bives.Executer
 
REQ_WANT_REACTIONS_GRAPHML - Static variable in class de.unirostock.sems.bives.Executer
 
REQ_WANT_REACTIONS_JSON - Static variable in class de.unirostock.sems.bives.Executer
 
REQ_WANT_REGULAR - Static variable in class de.unirostock.sems.bives.Executer
 
REQ_WANT_REPORT_HTML - Static variable in class de.unirostock.sems.bives.Executer
 
REQ_WANT_REPORT_MD - Static variable in class de.unirostock.sems.bives.Executer
 
REQ_WANT_REPORT_RST - Static variable in class de.unirostock.sems.bives.Executer
 
REQ_WANT_SBML - Static variable in class de.unirostock.sems.bives.Executer
 
REQ_WANT_SINGLE_COMP_HIERARCHY_DOT - Static variable in class de.unirostock.sems.bives.Executer
 
REQ_WANT_SINGLE_COMP_HIERARCHY_GRAPHML - Static variable in class de.unirostock.sems.bives.Executer
 
REQ_WANT_SINGLE_COMP_HIERARCHY_JSON - Static variable in class de.unirostock.sems.bives.Executer
 
REQ_WANT_SINGLE_FLATTEN - Static variable in class de.unirostock.sems.bives.Executer
 
REQ_WANT_SINGLE_REACTIONS_DOT - Static variable in class de.unirostock.sems.bives.Executer
 
REQ_WANT_SINGLE_REACTIONS_GRAPHML - Static variable in class de.unirostock.sems.bives.Executer
 
REQ_WANT_SINGLE_REACTIONS_JSON - Static variable in class de.unirostock.sems.bives.Executer
 
result(String) - Static method in class de.unirostock.sems.bives.Executer
 
run(String[]) - Method in class de.unirostock.sems.bives.Main
 

S

SBML - Static variable in class de.unirostock.sems.bives.tools.DocumentClassifier
 

U

UNKNOWN - Static variable in class de.unirostock.sems.bives.tools.DocumentClassifier
 
usage(String) - Method in class de.unirostock.sems.bives.Main
 

V

value - Variable in class de.unirostock.sems.bives.Executer.Option
 

W

WANT_CELLML - Static variable in class de.unirostock.sems.bives.Executer
 
WANT_COMP_HIERARCHY_DOT - Static variable in class de.unirostock.sems.bives.Executer
 
WANT_COMP_HIERARCHY_GRAPHML - Static variable in class de.unirostock.sems.bives.Executer
 
WANT_COMP_HIERARCHY_JSON - Static variable in class de.unirostock.sems.bives.Executer
 
WANT_DIFF - Static variable in class de.unirostock.sems.bives.Executer
 
WANT_DOCUMENTTYPE - Static variable in class de.unirostock.sems.bives.Executer
 
WANT_META - Static variable in class de.unirostock.sems.bives.Executer
 
WANT_REACTION_DOT - Static variable in class de.unirostock.sems.bives.Executer
 
WANT_REACTION_GRAPHML - Static variable in class de.unirostock.sems.bives.Executer
 
WANT_REACTION_JSON - Static variable in class de.unirostock.sems.bives.Executer
 
WANT_REGULAR - Static variable in class de.unirostock.sems.bives.Executer
 
WANT_REPORT_HTML - Static variable in class de.unirostock.sems.bives.Executer
 
WANT_REPORT_MD - Static variable in class de.unirostock.sems.bives.Executer
 
WANT_REPORT_RST - Static variable in class de.unirostock.sems.bives.Executer
 
WANT_SBML - Static variable in class de.unirostock.sems.bives.Executer
 
WANT_SINGLE_COMP_HIERARCHY_DOT - Static variable in class de.unirostock.sems.bives.Executer
 
WANT_SINGLE_COMP_HIERARCHY_GRAPHML - Static variable in class de.unirostock.sems.bives.Executer
 
WANT_SINGLE_COMP_HIERARCHY_JSON - Static variable in class de.unirostock.sems.bives.Executer
 
WANT_SINGLE_FLATTEN - Static variable in class de.unirostock.sems.bives.Executer
 
WANT_SINGLE_REACTION_DOT - Static variable in class de.unirostock.sems.bives.Executer
 
WANT_SINGLE_REACTION_GRAPHML - Static variable in class de.unirostock.sems.bives.Executer
 
WANT_SINGLE_REACTION_JSON - Static variable in class de.unirostock.sems.bives.Executer
 

X

XML - Static variable in class de.unirostock.sems.bives.tools.DocumentClassifier
 
XML_PATTERN - Static variable in class de.unirostock.sems.bives.Executer
Pattern to distinguish xml files from URLs
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Copyright © 2014 SEMS project @ University of Rostock. All rights reserved.