Package | Description |
---|---|
de.unirostock.sems.bives.sbml.algorithm | |
de.unirostock.sems.bives.sbml.api | |
de.unirostock.sems.bives.sbml.parser |
Modifier and Type | Method and Description |
---|---|
SBMLDocument |
SBMLValidator.getDocument() |
Constructor and Description |
---|
SBMLConnector(SBMLDocument sbmlDocA,
SBMLDocument sbmlDocB)
Instantiates a new SBML connector.
|
SBMLConnector(SBMLDocument sbmlDocA,
SBMLDocument sbmlDocB,
boolean allowDifferentIds,
boolean careAboutNames,
boolean stricterNames)
Instantiates a new SBML connector.
|
SBMLConnectorPreprocessor(SBMLDocument sbmlDocA,
SBMLDocument sbmlDocB)
Instantiates a new sBML connector preprocessor.
|
SBMLConnectorPreprocessor(SBMLDocument sbmlDocA,
SBMLDocument sbmlDocB,
boolean allowDifferentIds,
boolean careAboutNames,
boolean stricterNames)
Instantiates a new sBML connector preprocessor.
|
SBMLDiffInterpreter(de.unirostock.sems.bives.algorithm.SimpleConnectionManager conMgmt,
SBMLDocument sbmlDocA,
SBMLDocument sbmlDocB)
Instantiates a new SBML diff interpreter.
|
SBMLGraphProducer(SBMLDocument sbmlDoc)
Instantiates a new SBML graph producer for single document graphs.
|
SBMLGraphProducer(de.unirostock.sems.bives.algorithm.SimpleConnectionManager conMgmt,
SBMLDocument sbmlDocA,
SBMLDocument sbmlDocB)
Instantiates a new SBML graph producer for difference graphs.
|
Modifier and Type | Field and Description |
---|---|
protected SBMLDocument |
SBMLSingle.doc
The doc.
|
protected SBMLDocument |
SBMLDiff.doc1
The original document.
|
protected SBMLDocument |
SBMLDiff.doc2
The modified document.
|
Constructor and Description |
---|
SBMLDiff(SBMLDocument a,
SBMLDocument b)
Instantiates a new SBML differ.
|
SBMLDiff(SBMLDocument a,
SBMLDocument b,
de.unirostock.sems.bives.algorithm.DiffAnnotator diffAnnotator)
Instantiates a new SBML differ.
|
SBMLSingle(SBMLDocument doc)
Instantiates a new object to study single SBML documents.
|
Modifier and Type | Method and Description |
---|---|
SBMLDocument |
SBMLModel.getDocument()
Gets the SBML document.
|
Constructor and Description |
---|
SBMLModel(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode,
SBMLDocument sbmlDocument)
Instantiates a new SBML model.
|
Copyright © 2017 SEMS project @ University of Rostock. All rights reserved.