public abstract class SBMLSBase extends SBMLGenericObject
documentNode, sbmlModel
Constructor and Description |
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SBMLSBase(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode,
SBMLModel sbmlModel)
Instantiates a new SBMLS base.
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Modifier and Type | Method and Description |
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void |
addOntologyLink(String qualifier,
String link)
Adds an link into an ontology.
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de.unirostock.sems.xmlutils.ds.DocumentNode |
getAnnotation()
Gets the annotation.
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String |
getMetaId()
Gets the meta id.
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de.unirostock.sems.bives.ds.Xhtml |
getNotes()
Gets the notes.
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HashMap<String,List<String>> |
getOntologyLinks()
Gets the links that point to an ontology.
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de.unirostock.sems.bives.ds.ontology.SBOTerm |
getSBOTerm()
Gets the SBO term.
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getDocumentNode, getModel
public SBMLSBase(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel) throws BivesSBMLParseException
documentNode
- the document node encoding this entity in the corresponding XML treesbmlModel
- the SBML modelBivesSBMLParseException
- the bives sbml parse exceptionpublic HashMap<String,List<String>> getOntologyLinks()
public void addOntologyLink(String qualifier, String link)
qualifier
- the qualifierlink
- the linkpublic de.unirostock.sems.bives.ds.ontology.SBOTerm getSBOTerm()
public String getMetaId()
public de.unirostock.sems.bives.ds.Xhtml getNotes()
public de.unirostock.sems.xmlutils.ds.DocumentNode getAnnotation()
Copyright © 2016 SEMS project @ University of Rostock. All rights reserved.