public class SBMLSimpleSpeciesReference extends SBMLSBase
Modifier and Type | Field and Description |
---|---|
protected String |
id
The id of this species reference.
|
protected String |
name
The name.
|
protected SBMLSpecies |
species
The species it is linking to.
|
documentNode, sbmlModel
Constructor and Description |
---|
SBMLSimpleSpeciesReference(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode,
SBMLModel sbmlModel)
Instantiates a new SBML simple species reference.
|
Modifier and Type | Method and Description |
---|---|
SBMLSpecies |
getSpecies()
Gets the corresponding species.
|
String |
report()
Typeset this reference.
|
String |
reportDelete()
Report a delete.
|
String |
reportInsert()
Report an insert.
|
String |
reportModification(de.unirostock.sems.bives.algorithm.SimpleConnectionManager conMgmt,
SBMLSimpleSpeciesReference a,
SBMLSimpleSpeciesReference b)
Report modification between two versions of this species reference.
|
addOntologyLink, getAnnotation, getMetaId, getNotes, getOntologyLinks, getSBOTerm
getDocumentNode, getModel
protected String id
protected String name
protected SBMLSpecies species
public SBMLSimpleSpeciesReference(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel) throws BivesSBMLParseException
documentNode
- the document node encoding this entity in the corresponding XML treesbmlModel
- the SBML modelBivesSBMLParseException
- the bives sbml parse exceptionpublic SBMLSpecies getSpecies()
public String reportModification(de.unirostock.sems.bives.algorithm.SimpleConnectionManager conMgmt, SBMLSimpleSpeciesReference a, SBMLSimpleSpeciesReference b)
conMgmt
- the connection managera
- the original referenceb
- the modified referencepublic String reportInsert()
public String reportDelete()
public String report()
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