public abstract class SBMLRule extends SBMLSBase implements de.unirostock.sems.bives.algorithm.DiffReporter
Modifier and Type | Field and Description |
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static int |
ALGEBRAIC_RULE
The flag ALGEBRAIC_RULE.
|
static int |
ASSIGNMENT_RULE
The flag ASSIGNMENT_RULE.
|
protected de.unirostock.sems.bives.ds.MathML |
math
The math.
|
static int |
RATE_RULE
The flag RATE_RULE.
|
protected int |
type
The type flag encoding the type of rule.
|
documentNode, sbmlModel
Constructor and Description |
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SBMLRule(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode,
SBMLModel sbmlModel)
Instantiates a new SBML rule.
|
Modifier and Type | Method and Description |
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de.unirostock.sems.bives.ds.MathML |
getMath()
Gets the math.
|
int |
getRuleType()
Gets the rule type.
|
protected SBMLSBase |
resolveVariable(String ref)
Resolves a variable.
|
addOntologyLink, getAnnotation, getMetaId, getNotes, getOntologyLinks, getSBOTerm
getDocumentNode, getModel
public static final int ASSIGNMENT_RULE
public static final int ALGEBRAIC_RULE
public static final int RATE_RULE
protected de.unirostock.sems.bives.ds.MathML math
protected int type
public SBMLRule(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel) throws BivesSBMLParseException
documentNode
- the document node encoding this entity in the corresponding XML treesbmlModel
- the SBML modelBivesSBMLParseException
- the bives sbml parse exceptionpublic de.unirostock.sems.bives.ds.MathML getMath()
protected final SBMLSBase resolveVariable(String ref) throws BivesSBMLParseException
ref
- the reference nameBivesSBMLParseException
- the bives sbml parse exceptionpublic int getRuleType()
Copyright © 2016 SEMS project @ University of Rostock. All rights reserved.