public class SBMLDiff
extends de.unirostock.sems.bives.api.Diff
Modifier and Type | Field and Description |
---|---|
protected SBMLDocument |
doc1 |
protected SBMLDocument |
doc2 |
protected SBMLGraphProducer |
graphProducer |
protected SBMLDiffInterpreter |
interpreter |
Constructor and Description |
---|
SBMLDiff(File a,
File b) |
SBMLDiff(SBMLDocument a,
SBMLDocument b) |
SBMLDiff(String a,
String b) |
Modifier and Type | Method and Description |
---|---|
String |
getCRNDotGraph() |
Object |
getCRNGraph(de.unirostock.sems.bives.ds.graph.GraphTranslator gt) |
String |
getCRNGraphML() |
String |
getCRNJsonGraph() |
String |
getHierarchyDotGraph() |
Object |
getHierarchyGraph(de.unirostock.sems.bives.ds.graph.GraphTranslator gt) |
String |
getHierarchyGraphML() |
String |
getHierarchyJsonGraph() |
String |
getHTMLReport() |
String |
getMarkDownReport() |
String |
getReport(de.unirostock.sems.bives.markup.Typesetting ts) |
String |
getReStructuredTextReport() |
boolean |
mapTrees() |
protected SBMLDocument doc1
protected SBMLDocument doc2
protected SBMLGraphProducer graphProducer
protected SBMLDiffInterpreter interpreter
public SBMLDiff(File a, File b) throws de.unirostock.sems.xmltools.exception.XmlDocumentParseException, FileNotFoundException, ParserConfigurationException, SAXException, IOException, de.unirostock.sems.bives.exception.BivesDocumentConsistencyException, BivesSBMLParseException
de.unirostock.sems.xmltools.exception.XmlDocumentParseException
FileNotFoundException
ParserConfigurationException
SAXException
IOException
de.unirostock.sems.bives.exception.BivesDocumentConsistencyException
BivesSBMLParseException
public SBMLDiff(String a, String b) throws de.unirostock.sems.xmltools.exception.XmlDocumentParseException, FileNotFoundException, ParserConfigurationException, SAXException, IOException, de.unirostock.sems.bives.exception.BivesDocumentConsistencyException, BivesSBMLParseException
de.unirostock.sems.xmltools.exception.XmlDocumentParseException
FileNotFoundException
ParserConfigurationException
SAXException
IOException
de.unirostock.sems.bives.exception.BivesDocumentConsistencyException
BivesSBMLParseException
public SBMLDiff(SBMLDocument a, SBMLDocument b) throws de.unirostock.sems.xmltools.exception.XmlDocumentParseException, FileNotFoundException, ParserConfigurationException, SAXException, IOException, de.unirostock.sems.bives.exception.BivesDocumentConsistencyException
de.unirostock.sems.xmltools.exception.XmlDocumentParseException
FileNotFoundException
ParserConfigurationException
SAXException
IOException
de.unirostock.sems.bives.exception.BivesDocumentConsistencyException
public boolean mapTrees() throws BivesSBMLParseException, de.unirostock.sems.bives.exception.BivesConnectionException
mapTrees
in class de.unirostock.sems.bives.api.Diff
args
- ParserConfigurationException
IOException
SAXException
FileNotFoundException
BivesDocumentParseException
de.unirostock.sems.bives.exception.BivesConnectionException
BivesConsistencyException
BivesSBMLParseException
public String getCRNGraphML() throws ParserConfigurationException
getCRNGraphML
in class de.unirostock.sems.bives.api.Diff
ParserConfigurationException
public String getReport(de.unirostock.sems.bives.markup.Typesetting ts)
getReport
in class de.unirostock.sems.bives.api.Diff
public String getMarkDownReport()
getMarkDownReport
in class de.unirostock.sems.bives.api.Diff
public String getReStructuredTextReport()
getReStructuredTextReport
in class de.unirostock.sems.bives.api.Diff
public String getHTMLReport()
getHTMLReport
in class de.unirostock.sems.bives.api.Diff
public Object getCRNGraph(de.unirostock.sems.bives.ds.graph.GraphTranslator gt) throws Exception
getCRNGraph
in class de.unirostock.sems.bives.api.Diff
Exception
public String getCRNDotGraph()
getCRNDotGraph
in class de.unirostock.sems.bives.api.Diff
public String getCRNJsonGraph()
getCRNJsonGraph
in class de.unirostock.sems.bives.api.Diff
public Object getHierarchyGraph(de.unirostock.sems.bives.ds.graph.GraphTranslator gt)
getHierarchyGraph
in class de.unirostock.sems.bives.api.Diff
public String getHierarchyGraphML() throws ParserConfigurationException
getHierarchyGraphML
in class de.unirostock.sems.bives.api.Diff
ParserConfigurationException
public String getHierarchyDotGraph()
getHierarchyDotGraph
in class de.unirostock.sems.bives.api.Diff
public String getHierarchyJsonGraph()
getHierarchyJsonGraph
in class de.unirostock.sems.bives.api.Diff
Copyright © 2014 SEMS project @ University of Rostock. All rights reserved.