public class SBMLModel extends SBMLSBase
documentNode, sbmlModel
Constructor and Description |
---|
SBMLModel(de.unirostock.sems.xmltools.ds.DocumentNode documentNode,
SBMLDocument sbmlDocument) |
getAnnotation, getMetaId, getNotes, getSBOTerm, reportAnnotation, reportNotes
getDocumentNode, getModel
public SBMLModel(de.unirostock.sems.xmltools.ds.DocumentNode documentNode, SBMLDocument sbmlDocument) throws BivesSBMLParseException, de.unirostock.sems.bives.exception.BivesDocumentConsistencyException
documentNode
- sbmlDocument
- BivesSBMLParseException
BivesConsistencyException
de.unirostock.sems.bives.exception.BivesDocumentConsistencyException
public HashMap<String,SBMLFunctionDefinition> getFunctionDefinitions()
public HashMap<String,SBMLUnitDefinition> getUnitDefinitions()
public SBMLUnitDefinition getUnitDefinition(String kind)
public SBMLCompartmentType getCompartmentType(String id)
public HashMap<String,SBMLCompartmentType> getCompartmentTypes()
public HashMap<String,SBMLCompartment> getCompartments()
public SBMLCompartment getCompartment(String id)
public SBMLSpecies getSpecies(String id)
public HashMap<String,SBMLSpecies> getSpecies()
public SBMLSpeciesType getSpeciesType(String id)
public HashMap<String,SBMLSpeciesType> getSpeciesTypes()
public HashMap<String,SBMLParameter> getParameters()
public SBMLParameter getParameter(String id)
public void registerSpeciesReference(String id, SBMLSimpleSpeciesReference ref)
public SBMLSimpleSpeciesReference getSpeciesReference(String id)
public SBMLReaction getReaction(String id)
public HashMap<String,SBMLReaction> getReactions()
public Vector<SBMLConstraint> getConstraints()
public Vector<SBMLInitialAssignment> getInitialAssignments()
public String getID()
public String getName()
public void mapNode(de.unirostock.sems.xmltools.ds.DocumentNode node, SBMLSBase sbase)
public SBMLSBase getFromNode(de.unirostock.sems.xmltools.ds.TreeNode node)
Copyright © 2014 SEMS project @ University of Rostock. All rights reserved.