public class SBMLReaction extends SBMLGenericIdNameObject implements de.unirostock.sems.bives.ds.DiffReporter
id, name
documentNode, sbmlModel
Constructor and Description |
---|
SBMLReaction(de.unirostock.sems.xmltools.ds.DocumentNode documentNode,
SBMLModel sbmlModel) |
Modifier and Type | Method and Description |
---|---|
SBMLCompartment |
getCompartment() |
SBMLKineticLaw |
getKineticLaw() |
SBMLListOf |
getListOfModifiersNode() |
SBMLListOf |
getListOfProductsNode() |
SBMLListOf |
getListOfReactantsNode() |
Vector<SBMLSimpleSpeciesReference> |
getModifiers() |
Vector<SBMLSpeciesReference> |
getProducts() |
Vector<SBMLSpeciesReference> |
getReactants() |
boolean |
isFast() |
boolean |
isReversible() |
void |
report(de.unirostock.sems.bives.markup.MarkupDocument markupDocument,
de.unirostock.sems.bives.markup.MarkupElement me,
boolean insert) |
de.unirostock.sems.bives.markup.MarkupElement |
reportDelete(de.unirostock.sems.bives.markup.MarkupDocument markupDocument) |
de.unirostock.sems.bives.markup.MarkupElement |
reportInsert(de.unirostock.sems.bives.markup.MarkupDocument markupDocument) |
de.unirostock.sems.bives.markup.MarkupElement |
reportMofification(de.unirostock.sems.bives.algorithm.ClearConnectionManager conMgmt,
de.unirostock.sems.bives.ds.DiffReporter docA,
de.unirostock.sems.bives.ds.DiffReporter docB,
de.unirostock.sems.bives.markup.MarkupDocument markupDocument) |
getID, getName, getNameAndId, getNameOrId
getAnnotation, getMetaId, getNotes, getSBOTerm, reportAnnotation, reportNotes
getDocumentNode, getModel
public SBMLReaction(de.unirostock.sems.xmltools.ds.DocumentNode documentNode, SBMLModel sbmlModel) throws BivesSBMLParseException
documentNode
- sbmlDocument
- BivesSBMLParseException
public SBMLCompartment getCompartment()
public boolean isReversible()
public boolean isFast()
public SBMLKineticLaw getKineticLaw()
public SBMLListOf getListOfReactantsNode()
public SBMLListOf getListOfProductsNode()
public SBMLListOf getListOfModifiersNode()
public Vector<SBMLSpeciesReference> getReactants()
public Vector<SBMLSpeciesReference> getProducts()
public Vector<SBMLSimpleSpeciesReference> getModifiers()
public de.unirostock.sems.bives.markup.MarkupElement reportMofification(de.unirostock.sems.bives.algorithm.ClearConnectionManager conMgmt, de.unirostock.sems.bives.ds.DiffReporter docA, de.unirostock.sems.bives.ds.DiffReporter docB, de.unirostock.sems.bives.markup.MarkupDocument markupDocument)
reportMofification
in interface de.unirostock.sems.bives.ds.DiffReporter
public de.unirostock.sems.bives.markup.MarkupElement reportInsert(de.unirostock.sems.bives.markup.MarkupDocument markupDocument)
reportInsert
in interface de.unirostock.sems.bives.ds.DiffReporter
public de.unirostock.sems.bives.markup.MarkupElement reportDelete(de.unirostock.sems.bives.markup.MarkupDocument markupDocument)
reportDelete
in interface de.unirostock.sems.bives.ds.DiffReporter
public void report(de.unirostock.sems.bives.markup.MarkupDocument markupDocument, de.unirostock.sems.bives.markup.MarkupElement me, boolean insert)
Copyright © 2014 SEMS project @ University of Rostock. All rights reserved.