public class SBMLSingle
extends de.unirostock.sems.bives.api.Single
Modifier and Type | Field and Description |
---|---|
protected SBMLDocument |
doc1 |
protected SBMLGraphProducer |
graphProducer |
Constructor and Description |
---|
SBMLSingle(File a) |
SBMLSingle(SBMLDocument a) |
SBMLSingle(String a) |
Modifier and Type | Method and Description |
---|---|
String |
getCRNDotGraph() |
Object |
getCRNGraph(de.unirostock.sems.bives.ds.graph.GraphTranslator gt) |
String |
getCRNGraphML() |
String |
getCRNJsonGraph() |
String |
getHierarchyDotGraph() |
Object |
getHierarchyGraph(de.unirostock.sems.bives.ds.graph.GraphTranslator gt) |
String |
getHierarchyGraphML() |
String |
getHierarchyJsonGraph() |
protected SBMLDocument doc1
protected SBMLGraphProducer graphProducer
public SBMLSingle(File a) throws de.unirostock.sems.xmltools.exception.XmlDocumentParseException, FileNotFoundException, ParserConfigurationException, SAXException, IOException, de.unirostock.sems.bives.exception.BivesDocumentConsistencyException, BivesSBMLParseException
de.unirostock.sems.xmltools.exception.XmlDocumentParseException
FileNotFoundException
ParserConfigurationException
SAXException
IOException
de.unirostock.sems.bives.exception.BivesDocumentConsistencyException
BivesSBMLParseException
public SBMLSingle(String a) throws de.unirostock.sems.xmltools.exception.XmlDocumentParseException, FileNotFoundException, ParserConfigurationException, SAXException, IOException, de.unirostock.sems.bives.exception.BivesDocumentConsistencyException, BivesSBMLParseException
de.unirostock.sems.xmltools.exception.XmlDocumentParseException
FileNotFoundException
ParserConfigurationException
SAXException
IOException
de.unirostock.sems.bives.exception.BivesDocumentConsistencyException
BivesSBMLParseException
public SBMLSingle(SBMLDocument a) throws de.unirostock.sems.xmltools.exception.XmlDocumentParseException, FileNotFoundException, ParserConfigurationException, SAXException, IOException, de.unirostock.sems.bives.exception.BivesDocumentConsistencyException
de.unirostock.sems.xmltools.exception.XmlDocumentParseException
FileNotFoundException
ParserConfigurationException
SAXException
IOException
de.unirostock.sems.bives.exception.BivesDocumentConsistencyException
public String getCRNGraphML() throws ParserConfigurationException
getCRNGraphML
in class de.unirostock.sems.bives.api.Single
ParserConfigurationException
public Object getCRNGraph(de.unirostock.sems.bives.ds.graph.GraphTranslator gt) throws Exception
getCRNGraph
in class de.unirostock.sems.bives.api.Single
Exception
public String getCRNDotGraph()
getCRNDotGraph
in class de.unirostock.sems.bives.api.Single
public String getCRNJsonGraph()
getCRNJsonGraph
in class de.unirostock.sems.bives.api.Single
public Object getHierarchyGraph(de.unirostock.sems.bives.ds.graph.GraphTranslator gt)
getHierarchyGraph
in class de.unirostock.sems.bives.api.Single
public String getHierarchyGraphML() throws ParserConfigurationException
getHierarchyGraphML
in class de.unirostock.sems.bives.api.Single
ParserConfigurationException
public String getHierarchyDotGraph()
getHierarchyDotGraph
in class de.unirostock.sems.bives.api.Single
public String getHierarchyJsonGraph()
getHierarchyJsonGraph
in class de.unirostock.sems.bives.api.Single
Copyright © 2014 SEMS project @ University of Rostock. All rights reserved.