Package | Description |
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de.unirostock.sems.bives.cellml.parser |
Modifier and Type | Class and Description |
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class |
CellMLComponent
The Class CellMLComponent representing a single component in a CellML model.
|
class |
CellMLModel
The Class CellMLModel representing a computational model that was encoded in CellML.
|
class |
CellMLReaction
The Class CellMLReaction representing a reaction defined in a CellML model.
|
class |
CellMLReactionSubstance
The Class CellMLReactionSubstance representing a substance taking part in a reaction.
|
class |
CellMLReactionSubstance.Role
The Class Role.
|
class |
CellMLUnit
The Class CellMLUnit representing a unit in a CellML model.
|
class |
CellMLUserUnit
The Class CellMLUserUnit representing a CellML unit defined by a user.
|
class |
CellMLVariable
The Class CellMLVariable representing a variable of a CellML model.
|
Modifier and Type | Method and Description |
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CellMLEntity |
CellMLModel.getEntityByMetaId(String metaId)
Get an entity by its meta id.
|
CellMLEntity |
CellMLModel.getFromNode(de.unirostock.sems.xmlutils.ds.TreeNode node)
Gets an entity given a node in an XML tree.
|
Modifier and Type | Method and Description |
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List<de.unirostock.sems.bives.ds.rdf.RDFDescription> |
CellMLModel.getDescriptions(CellMLEntity entity)
Gets the RDF descriptions for an entity.
|
void |
CellMLModel.mapNode(de.unirostock.sems.xmlutils.ds.DocumentNode node,
CellMLEntity entity)
Map document node to a CellML entity.
|
void |
CellMLModel.registerMetaId(String metaId,
CellMLEntity cellMLEntity)
Register an entity by its meta id.
|
Modifier and Type | Method and Description |
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void |
CellMLUserUnit.getDependencies(Map<CellMLUserUnit,List<CellMLEntity>> list)
Add the units this unit depends on to a global list of dependencies.
|
void |
CellMLVariable.getDependencies(Map<CellMLUserUnit,List<CellMLEntity>> list)
Adds the unit this variable depends on to a global list of dependencies.
|
void |
CellMLComponent.getDependencies(Map<CellMLUserUnit,List<CellMLEntity>> list)
Adds the units the variables in this component depend on to a global list of dependencies.
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Copyright © 2017 SEMS project @ University of Rostock. All rights reserved.