Package | Description |
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de.unirostock.sems.bives.cellml.api | |
de.unirostock.sems.bives.cellml.parser |
Constructor and Description |
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CellMLDiff(File a,
File b)
Instantiates a new CellML differ.
|
CellMLDiff(File a,
File b,
de.unirostock.sems.bives.algorithm.DiffAnnotator diffAnnotator)
Instantiates a new CellML differ.
|
CellMLDiff(String a,
String b)
Instantiates a new CellML differ.
|
CellMLDiff(String a,
String b,
de.unirostock.sems.bives.algorithm.DiffAnnotator diffAnnotator)
Instantiates a new CellML differ.
|
CellMLDiff(de.unirostock.sems.xmlutils.ds.TreeDocument a,
de.unirostock.sems.xmlutils.ds.TreeDocument b)
Instantiates a new CellML differ.
|
CellMLDiff(de.unirostock.sems.xmlutils.ds.TreeDocument a,
de.unirostock.sems.xmlutils.ds.TreeDocument b,
de.unirostock.sems.bives.algorithm.DiffAnnotator diffAnnotator)
Instantiates a new CellML differ.
|
CellMLSingle(File file)
Instantiates a new object.
|
CellMLSingle(String xml)
Instantiates a new object.
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CellMLSingle(de.unirostock.sems.xmlutils.ds.TreeDocument td)
Instantiates a new object.
|
Modifier and Type | Method and Description |
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static CellMLConnection.ConnectedComponents |
CellMLConnection.parseConnection(CellMLModel model,
CellMLHierarchy hierarchy,
de.unirostock.sems.xmlutils.ds.DocumentNode connection,
HashMap<String,CellMLComponent> limit)
Parses a connection as defined in a CellML document.
|
void |
CellMLHierarchy.parseGroup(de.unirostock.sems.xmlutils.ds.DocumentNode node)
Parses a component group.
|
static String |
CellMLReactionSubstance.resolveDirection(int direction)
Resolve direction of this substance.
|
static int |
CellMLReactionSubstance.resolveDirection(String direction)
Resolve direction.
|
static String |
CellMLReactionSubstance.resolveRole(int role)
Resolve the role flag to get a textual representation.
|
static int |
CellMLReactionSubstance.resolveRole(String role)
Resolve role as a string to get the corresponding flag.
|
static int |
CellMLUserUnit.scale(String s)
Get the scaling factor given a textual representation.
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Constructor and Description |
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BaseQuantity(de.unirostock.sems.xmlutils.ds.DocumentNode node)
Instantiates a new base quantity.
|
CellMLComponent(CellMLModel model,
de.unirostock.sems.xmlutils.ds.DocumentNode node)
Instantiates a new CellML component.
|
CellMLDocument(de.unirostock.sems.xmlutils.ds.TreeDocument doc)
Instantiates a new cell ml document.
|
CellMLImporter(de.unirostock.sems.xmlutils.ds.DocumentNode node,
CellMLModel model)
Instantiates a new CellML importer.
|
CellMLModel(CellMLDocument doc,
de.unirostock.sems.xmlutils.ds.DocumentNode rootNode)
Instantiates a new model.
|
CellMLReaction(CellMLModel model,
CellMLComponent component,
de.unirostock.sems.xmlutils.ds.DocumentNode node)
Instantiates a new CellML reaction.
|
CellMLReactionSubstance(CellMLModel model,
CellMLComponent component,
de.unirostock.sems.xmlutils.ds.DocumentNode node)
Instantiates a new CellML reaction substance.
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CellMLUserUnit(CellMLModel model,
CellMLUnitDictionary dict,
CellMLComponent component,
de.unirostock.sems.xmlutils.ds.DocumentNode node)
Instantiates a new CellML user unit.
|
CellMLVariable(CellMLModel model,
CellMLComponent component,
de.unirostock.sems.xmlutils.ds.DocumentNode node)
Instantiates a new CellML variable.
|
Role(CellMLModel model,
de.unirostock.sems.xmlutils.ds.DocumentNode node)
Instantiates a new role.
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Copyright © 2017 SEMS project @ University of Rostock. All rights reserved.